Serveur d'exploration sur le peuplier

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume.

Identifieur interne : 001E15 ( Main/Exploration ); précédent : 001E14; suivant : 001E16

Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume.

Auteurs : Panagiotis Gkorezis [Belgique] ; Francois Rineau [Belgique] ; Jonathan Van Hamme [Canada] ; Andrea Franzetti [Italie] ; Matteo Daghio [Italie] ; Sofie Thijs [Belgique] ; Nele Weyens [Belgique] ; Jaco Vangronsveld [Belgique]

Source :

RBID : pubmed:25657268

Abstract

We report the 3.7-Mb draft genome of Acinetobacter oleivorans strain PF1, a hydrocarbonoclastic Gram-negative bacterium in the class Gammaproteobacteria, isolated from poplar trees growing on a diesel-contaminated plume at the Ford Motor Company site in Genk, Belgium. Strain PF1 is a potent plant-growth promoter, useful for diesel fuel phytoremediation applications.

DOI: 10.1128/genomeA.01430-14
PubMed: 25657268
PubMed Central: PMC4319608


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume.</title>
<author>
<name sortKey="Gkorezis, Panagiotis" sort="Gkorezis, Panagiotis" uniqKey="Gkorezis P" first="Panagiotis" last="Gkorezis">Panagiotis Gkorezis</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Rineau, Francois" sort="Rineau, Francois" uniqKey="Rineau F" first="Francois" last="Rineau">Francois Rineau</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Van Hamme, Jonathan" sort="Van Hamme, Jonathan" uniqKey="Van Hamme J" first="Jonathan" last="Van Hamme">Jonathan Van Hamme</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Biological Sciences, Thompson Rivers University, Kamloops, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Franzetti, Andrea" sort="Franzetti, Andrea" uniqKey="Franzetti A" first="Andrea" last="Franzetti">Andrea Franzetti</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Environmental Sciences, University of Milano-Bicocca, Milano, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Environmental Sciences, University of Milano-Bicocca, Milano</wicri:regionArea>
<wicri:noRegion>Milano</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Daghio, Matteo" sort="Daghio, Matteo" uniqKey="Daghio M" first="Matteo" last="Daghio">Matteo Daghio</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Environmental Sciences, University of Milano-Bicocca, Milano, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Environmental Sciences, University of Milano-Bicocca, Milano</wicri:regionArea>
<wicri:noRegion>Milano</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Thijs, Sofie" sort="Thijs, Sofie" uniqKey="Thijs S" first="Sofie" last="Thijs">Sofie Thijs</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Weyens, Nele" sort="Weyens, Nele" uniqKey="Weyens N" first="Nele" last="Weyens">Nele Weyens</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Vangronsveld, Jaco" sort="Vangronsveld, Jaco" uniqKey="Vangronsveld J" first="Jaco" last="Vangronsveld">Jaco Vangronsveld</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium jaco.vangronsveld@uhasselt.be.</nlm:affiliation>
<country wicri:rule="url">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="RBID">pubmed:25657268</idno>
<idno type="pmid">25657268</idno>
<idno type="doi">10.1128/genomeA.01430-14</idno>
<idno type="pmc">PMC4319608</idno>
<idno type="wicri:Area/Main/Corpus">001E17</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001E17</idno>
<idno type="wicri:Area/Main/Curation">001E17</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001E17</idno>
<idno type="wicri:Area/Main/Exploration">001E17</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume.</title>
<author>
<name sortKey="Gkorezis, Panagiotis" sort="Gkorezis, Panagiotis" uniqKey="Gkorezis P" first="Panagiotis" last="Gkorezis">Panagiotis Gkorezis</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Rineau, Francois" sort="Rineau, Francois" uniqKey="Rineau F" first="Francois" last="Rineau">Francois Rineau</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Van Hamme, Jonathan" sort="Van Hamme, Jonathan" uniqKey="Van Hamme J" first="Jonathan" last="Van Hamme">Jonathan Van Hamme</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Biological Sciences, Thompson Rivers University, Kamloops, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Franzetti, Andrea" sort="Franzetti, Andrea" uniqKey="Franzetti A" first="Andrea" last="Franzetti">Andrea Franzetti</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Environmental Sciences, University of Milano-Bicocca, Milano, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Environmental Sciences, University of Milano-Bicocca, Milano</wicri:regionArea>
<wicri:noRegion>Milano</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Daghio, Matteo" sort="Daghio, Matteo" uniqKey="Daghio M" first="Matteo" last="Daghio">Matteo Daghio</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Environmental Sciences, University of Milano-Bicocca, Milano, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Environmental Sciences, University of Milano-Bicocca, Milano</wicri:regionArea>
<wicri:noRegion>Milano</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Thijs, Sofie" sort="Thijs, Sofie" uniqKey="Thijs S" first="Sofie" last="Thijs">Sofie Thijs</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Weyens, Nele" sort="Weyens, Nele" uniqKey="Weyens N" first="Nele" last="Weyens">Nele Weyens</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Vangronsveld, Jaco" sort="Vangronsveld, Jaco" uniqKey="Vangronsveld J" first="Jaco" last="Vangronsveld">Jaco Vangronsveld</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium jaco.vangronsveld@uhasselt.be.</nlm:affiliation>
<country wicri:rule="url">Belgique</country>
<wicri:regionArea>Centre for Environmental Sciences, Hasselt University, Diepenbeek</wicri:regionArea>
<wicri:noRegion>Diepenbeek</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Genome announcements</title>
<idno type="ISSN">2169-8287</idno>
<imprint>
<date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">We report the 3.7-Mb draft genome of Acinetobacter oleivorans strain PF1, a hydrocarbonoclastic Gram-negative bacterium in the class Gammaproteobacteria, isolated from poplar trees growing on a diesel-contaminated plume at the Ford Motor Company site in Genk, Belgium. Strain PF1 is a potent plant-growth promoter, useful for diesel fuel phytoremediation applications. </div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM">
<PMID Version="1">25657268</PMID>
<DateCompleted>
<Year>2015</Year>
<Month>02</Month>
<Day>06</Day>
</DateCompleted>
<DateRevised>
<Year>2020</Year>
<Month>09</Month>
<Day>30</Day>
</DateRevised>
<Article PubModel="Electronic">
<Journal>
<ISSN IssnType="Print">2169-8287</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>3</Volume>
<Issue>1</Issue>
<PubDate>
<Year>2015</Year>
<Month>Feb</Month>
<Day>05</Day>
</PubDate>
</JournalIssue>
<Title>Genome announcements</Title>
<ISOAbbreviation>Genome Announc</ISOAbbreviation>
</Journal>
<ArticleTitle>Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume.</ArticleTitle>
<ELocationID EIdType="doi" ValidYN="Y">10.1128/genomeA.01430-14</ELocationID>
<ELocationID EIdType="pii" ValidYN="Y">e01430-14</ELocationID>
<Abstract>
<AbstractText>We report the 3.7-Mb draft genome of Acinetobacter oleivorans strain PF1, a hydrocarbonoclastic Gram-negative bacterium in the class Gammaproteobacteria, isolated from poplar trees growing on a diesel-contaminated plume at the Ford Motor Company site in Genk, Belgium. Strain PF1 is a potent plant-growth promoter, useful for diesel fuel phytoremediation applications. </AbstractText>
<CopyrightInformation>Copyright © 2015 Gkorezis et al.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Gkorezis</LastName>
<ForeName>Panagiotis</ForeName>
<Initials>P</Initials>
<AffiliationInfo>
<Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Rineau</LastName>
<ForeName>Francois</ForeName>
<Initials>F</Initials>
<AffiliationInfo>
<Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Van Hamme</LastName>
<ForeName>Jonathan</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>Department of Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Franzetti</LastName>
<ForeName>Andrea</ForeName>
<Initials>A</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-1279-9940</Identifier>
<AffiliationInfo>
<Affiliation>Department of Environmental Sciences, University of Milano-Bicocca, Milano, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Daghio</LastName>
<ForeName>Matteo</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Environmental Sciences, University of Milano-Bicocca, Milano, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Thijs</LastName>
<ForeName>Sofie</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Weyens</LastName>
<ForeName>Nele</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Vangronsveld</LastName>
<ForeName>Jaco</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium jaco.vangronsveld@uhasselt.be.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2015</Year>
<Month>02</Month>
<Day>05</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>Genome Announc</MedlineTA>
<NlmUniqueID>101595808</NlmUniqueID>
</MedlineJournalInfo>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="entrez">
<Year>2015</Year>
<Month>2</Month>
<Day>7</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2015</Year>
<Month>2</Month>
<Day>7</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2015</Year>
<Month>2</Month>
<Day>7</Day>
<Hour>6</Hour>
<Minute>1</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">25657268</ArticleId>
<ArticleId IdType="pii">3/1/e01430-14</ArticleId>
<ArticleId IdType="doi">10.1128/genomeA.01430-14</ArticleId>
<ArticleId IdType="pmc">PMC4319608</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Microbiology. 2001 Jun;147(Pt 6):1621-30</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11390693</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Res Microbiol. 2012 Apr;163(3):161-72</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22210401</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2010 Jun 25;5(6):e11147</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20593022</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genomics. 2008 Feb 08;9:75</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18261238</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2004 Jun;14(6):1147-59</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15140833</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Belgique</li>
<li>Canada</li>
<li>Italie</li>
</country>
</list>
<tree>
<country name="Belgique">
<noRegion>
<name sortKey="Gkorezis, Panagiotis" sort="Gkorezis, Panagiotis" uniqKey="Gkorezis P" first="Panagiotis" last="Gkorezis">Panagiotis Gkorezis</name>
</noRegion>
<name sortKey="Rineau, Francois" sort="Rineau, Francois" uniqKey="Rineau F" first="Francois" last="Rineau">Francois Rineau</name>
<name sortKey="Thijs, Sofie" sort="Thijs, Sofie" uniqKey="Thijs S" first="Sofie" last="Thijs">Sofie Thijs</name>
<name sortKey="Vangronsveld, Jaco" sort="Vangronsveld, Jaco" uniqKey="Vangronsveld J" first="Jaco" last="Vangronsveld">Jaco Vangronsveld</name>
<name sortKey="Weyens, Nele" sort="Weyens, Nele" uniqKey="Weyens N" first="Nele" last="Weyens">Nele Weyens</name>
</country>
<country name="Canada">
<noRegion>
<name sortKey="Van Hamme, Jonathan" sort="Van Hamme, Jonathan" uniqKey="Van Hamme J" first="Jonathan" last="Van Hamme">Jonathan Van Hamme</name>
</noRegion>
</country>
<country name="Italie">
<noRegion>
<name sortKey="Franzetti, Andrea" sort="Franzetti, Andrea" uniqKey="Franzetti A" first="Andrea" last="Franzetti">Andrea Franzetti</name>
</noRegion>
<name sortKey="Daghio, Matteo" sort="Daghio, Matteo" uniqKey="Daghio M" first="Matteo" last="Daghio">Matteo Daghio</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001E15 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001E15 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:25657268
   |texte=   Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:25657268" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020